Papers
1.Spatial multi-omics at subcellular resolution via high-throughput in situ pairwise sequencing. Xiaofeng Wu#, Weize Xu#, Lulu Deng, Yue Li, Zhongchao Wang, Leqiang Sun, Anran Gao, Haoqi Wang, Xiaodan Yang, Chengchao Wu, Yanyan Zou, Keji Yan, Zhixiang Liu, Lingkai Zhang, Guohua Du, Liyao Yang, Da Lin, Ping Wang, Yunyun Han, Zhenfang Fu, Jinxia Dai*, Gang Cao*, Nature Biomedical Engineering. 2024
2. MGA-seq: robust identification of extrachromosomal DNA and genetic variants using multiple genetic abnormality sequencing. Da Lin*#, Yanyan Zou#, Xinyu Li, Jinyue Wang, Qin Xiao, Xiaochen Gao, Fei Lin, Ningyuan Zhang, Ming Jiao, Yu Guo, Zhaowei Teng, Shiyi Li, Yongchang Wei, Fuling Zhou, Rong Yin, Siheng Zhang, Lingyu Xing, Weize Xu, Xiaofeng Wu, Bing Yang, Ke Xiao, Chengchao Wu, Yingfeng Tao, XiaoqingYang, Jing Zhang, Sheng Hu, Shuang Dong, Xiaoyu Li, Shengwei Ye, Zhidan Hong, Yihang Pan, Yuqin Yang, Haixiang Sun*, Gang Cao*. Genome Biology, 2023
3. Highly efficient and robust π-FISH rainbow for multiplexed in situ detection of diverse biomolecules. Tao Y#, Zhou X#, Sun L, Lin D, Cai H, Chen X, Zhou W, Yang B, Hu Z, Yu J, Zhang J, Yang X, Yang F, Shen B, Qi W, Fu Z, Dai J*, Cao G*. Nature Communications. 2023 (Featured article)
4. Decoding the spatial chromatin organization and dynamic epigenetic landscapes of macrophage cells during differentiation and immune activation. Lin D#, Xu W#, Hong P#, Wu C, Zhang Z, Zhang S, Xing L, Yang B, Zhou W, Xiao Q, Wang J, Wang C, He Y, Chen X, Cao X, Man J, Reheman A, Wu X, Hao X, Hu Z, Chen C, Cao Z, Yin R, Fu ZF, Zhou R, Teng Z, Li G*, Cao G*. Nature Communications. 2022
5. Neuron-derived neuropeptide Y fine-tunes the splenic immune responses. Yu J#, Xiao K#, Chen X, Deng L, Zhang L, Li Y, Gao A, Gao J, Wu C, Yang X, Zhou Q, Yang J, Bao C, Jiao J, Cheng S, Guo Z, Xu W, Cao X, Guo Z, Dai J, Hu J, Fu Z, Cao G*. Neuron. 2022 (Highlight article)
6. Reprogramming Mycobacterium tuberculosis CRISPR System for Gene Editing and Genome-wide RNA Interference Screening. Rahman K#, Jamal M#, Chen X, Zhou W, Yang B, Zou Y, Xu W, Lei Y, Wu C, Cao X, Tyagi R, Naeem MA, Lin D, Habib Z, Peng N, Fu ZF*, Cao G*. Genomics Proteomics Bioinformatics. 2021
7. Strategies to package recombinant Adeno-Associated Virus expressing the N-terminal gasdermin domain for tumor treatment. Lu Y#, He W#, Huang X, He Y, Gou X, Liu X, Hu Z, Xu W, Rahman K, Li S, Hu S*, Luo J*, Cao G*. Nature Communications. 2021
8. Single-cell atlas of domestic pig cerebral cortex and hypothalamus. Zhu J#, Chen F#, Luo L#, Wu W#, Dai J#, Zhong J, Lin X, Chai C, Ding P, Liang L, Wang S, Ding X, Chen Y, Wang H, Qiu J, Wang F, Sun C, Zeng Y, Fang J, Jiang X, Liu P, Tang G, Qiu X, Zhang X, Ruan Y, Jiang S, Li J, Zhu S, Xu X, Li F, Liu Z, Cao G*, Chen D*. Science Bulletin. 2021 (Cover Story)
9. RUNX1-mediated alphaherpesvirus-host trans-species chromatin interaction promotes viral transcription. Xiao K#, Xiong D#, Chen G, Yu J, Li Y, Chen K, Zhang L, Xu Y, Xu Q, Huang X, Gao A, Cao K, Yan K, Dai J, Hu X, Ruan Y, Fu Z*, Li G*, Cao G*. Science Advances. 2021
10. Differences in neurotropism and neurotoxicity among retrograde viral tracers. Sun L#, Tang Y#, Yan K, Yu J, Zou Y, Xu W, Xiao K, Zhang Z, Li W, Wu B, Hu Z, Chen K, Fu ZF, Dai J*, Cao G*. Mol Neurodegener. 2019